Tumor types in JCGA (134)

Tumor site Tumor type Oncotree / TCGA code No. of samples Principal tumor types in JCGA Tumor types selected for study in TCGA
Central nervous system/Brain Lower-Grade Glioma LGG 34
Glioblastoma Multiforme GBM 33
Meningioma MNG 20  
Malignant Lymphoma MLYM 3    
Desmoplastic Small-Round-Cell Tumor DSRCT 1    
Eye Uveal Melanoma UM 2  
Head and Neck Head and Neck Squamous Cell Carcinoma HNSC 288
Salivary Carcinoma SACA 28  
Adenosquamous Carcinoma of the Tongue ASCT 1    
Head and Neck Neuroendocrine Carcinoma HNNE 1    
Head and Neck Mucosal Melanoma HNMUCM 1    
Spindle Cell Carcinoma of the Head and Neck --- 1    
Head and Neck Carcinoma, Other OHNCA 8    
Esophagus Esophageal Squamous Cell Carcinoma ESCC 46
Esophageal Adenocarcinoma ESCA 6    
Esophageal Carcinosarcoma  --- 2    
Stomach Stomach Adenocarcinoma STAD 574
Adenosquamous Carcinoma of the Stomach STAS 3    
Esophagus/Stomach Gastrointestinal Neuroendocrine Tumors of the Esophagus/Stomach GINETES 15    
Adenocarcinoma of the Gastroesophageal Junction GEJ 1    
Small intestine Small Intestinal Carcinoma SBC 14  
Small Bowel Well-Differentiated Neuroendocrine Tumor SBWDNET 5    
Appendix Mucinous Adenocarcinoma of the Appendix MAAP 2    
Large intestine Colon Adenocarcinoma COAD 964
Rectal Adenocarcinoma READ 755
Colon Cancer, NOS --- 1    
Anus Anal Squamous Cell Carcinoma ANSC 2    
Anorectal Mucosal Melanoma ARMM 1    
Liver Hepatocellular Carcinoma HCC 222
Malignant Nonepithelial Tumor of the Liver LIMNET 5    
Hepatocellular Carcinoma plus Intrahepatic Cholangiocarcinoma HCCIHCH 5    
Angiomyolipoma --- 2    
Liver Angiosarcoma LIAS 1    
Biliary tract Cholangiocarcinoma CHOL 37
Gallbladder Cancer GBC 5    
Neuroendocrine Carcinoma --- 1    
Ampulla of Vater Ampullary Carcinoma AMPCA 3    
Pancreas Pancreatic Adenocarcinoma PAAD 95
Pancreatic Neuroendocrine Tumor PANET 11    
Adenosquamous Carcinoma of the Pancreas PAASC 10    
Intraductal Papillary Mucinous Neoplasm IPMN 7    
Solid Pseudopapillary Neoplasm of the Pancreas SPN 3    
Undifferentiated Carcinoma of the Pancreas UCP 1    
Lung Lung Adenocarcinoma LUAD 644
Lung Squamous Cell Carcinoma LUSC 173
Lung Neuroendocrine Tumor LNET 34  
Lung Adenosquamous Carcinoma LUAS 21    
Pleomorphic Carcinoma of the Lung LUPC 9    
Poorly Differentiated Non-Small Cell Lung Cancer NSCLCPD 2    
Adenoid Cystic Carcinoma of the Lung LUACC 2    
Large Cell Lung Carcinoma LCLC 2    
Sclerosing Pneumocytoma --- 1    
Mucinous AIS-like Bronchiolar Cell Hyperplasia --- 1    
Mixed Squamous Cell and Glandular Papilloma --- 1    
Pleura Pleural Mesothelioma PLMESO 11
Mediastinum Mediastinal Non-seminomatous Germ Cell Tumor --- 2    
Thymic MALT Lymphoma --- 1    
Mediastinal Tumor, NOS --- 1    
Thymus Thymoma THYM 34
Thymic Carcinoma THYC 7    
Breast Breast Invasive Ductal Carcinoma IDC 235
Breast Invasive Lobular Carcinoma ILC 26
Metaplastic Breast Cancer MBC 12  
Breast Invasive Mixed Mucinous Carcinoma IMMC 7    
Breast Ductal Carcinoma In Situ DCIS 3    
Breast Mixed Ductal and Lobular Carcinoma MDLC 2    
Phyllodes Tumor of the Breast PT 1    
Thyroid Papillary Thyroid Cancer THPA 3  
Anaplastic Thyroid Cancer THAP 2    
Medullary Thyroid Cancer THME 1    
Bone Osteosarcoma OS 10  
Chondrosarcoma CHS 2    
Ewing Sarcoma ES 1    
Osteochondroma --- 1    
Bone Tumor, NOS --- 1    
Soft tissue Gastrointestinal Stromal Tumor GIST 83  
Liposarcoma LIPO 5    
Rhabdomyosarcoma RMS 2    
Solitary Fibrous Tumor/Hemangiopericytoma SFT 1    
Well-Differentiated Liposarcoma WDLS 1    
Low-Grade Fibromyxoid Sarcoma LGFMS 1    
Soft Tissue Myoepithelial Carcinoma STMYEC 1    
Paraganglioma PGNG 1  
Spindle Cell/Sclerosing Rhabdomyosarcoma SCSRMS 1    
Epithelioid Hemangioendothelioma EHAE 1    
Sarcoma, NOS SARCNOS 3    
Soft tissue/Peripheral nervous system Sarcoma SARC 25
Cervix Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma CESC 12
Cervical Neuroendocrine Tumor CENE 1    
Uterus Uterine Endometrioid Carcinoma UEC 71
Uterine Carcinosarcoma/Uterine Malignant Mixed Mullerian Tumor UCS 9  
Uterine Serous Carcinoma/Uterine Papillary Serous Carcinoma USC 6    
Uterine Mixed Endometrial Carcinoma UMEC 2    
Uterine Adenosarcoma UAS 2    
Uterine Clear Cell Carcinoma UCCC 2    
Uterine Perivascular Epithelioid Cell Tumor UPECOMA 1    
Uterine Neuroendocrine Carcinoma UNEC 1    
Ovary/Fallopian tube Ovarian Epithelial Tumor OVT 69
Immature Teratoma OIMT 2    
Struma Ovarii --- 2    
High-Grade Serous Fallopian Tube Cancer HGSFT 1    
Sex Cord Stromal Tumor SCST 1    
Mixed Germ Cell Tumor OMGCT 1    
Yolk Sac Tumor OYST 1    
Struma Ovarii + Dermoid Cyst --- 1    
Adult Granulosa Cell Tumor --- 1    
Dedifferentiated Carcinoma of the Ovary --- 1    
Squamous Cell Carcinoma of the Ovary --- 1    
Peritoneum Peritoneal Serous Carcinoma PSEC 2    
Teratoma of the Retroperitoneum --- 1    
Ovary/Fallopian tube + Uterus Clear Cell Ovarian Cancer + Uterine Endometrioid Carcinoma CCOV + UEC 1    
Kidney Renal Clear Cell Carcinoma CCRCC 31
Chromophobe Renal Cell Carcinoma CHRCC 2  
Papillary Renal Cell Carcinoma PRCC 2  
Renal Neuroendocrine Tumor RNET 1    
Juxtaglomerular Cell Tumor --- 1    
Bladder/Urinary tract Upper Tract Urothelial Carcinoma UTUC 2  
Skin Melanoma MEL 22
Cutaneous Squamous Cell Carcinoma CSCC 18  
Dermatofibrosarcoma Protuberans DFSP 6    
Extramammary Paget Disease EMPD 5    
Poroma/Acrospiroma PORO 2    
Merkel Cell Carcinoma MCC 1    
Porocarcinoma/Spiroadenocarcinoma POCA 1    
Sweat Gland Carcinoma/Apocrine Eccrine Carcinoma AECA 1    
Basal Cell Carcinoma BCC 1    
Vulva/Vagina Squamous Cell Carcinoma of the Vulva/Vagina VSC 4    
Mucosal Melanoma of the Vulva/Vagina VMM 1    
Peripheral nervous system Neurofibroma NFIB 2    
Neuroblastoma NBL 1    
Head and neck/Thymus/Pancreas/Small intestine Multiple Endocrine Neoplasia Type 1 --- 6    
Lymphoid Lymphoid Neoplasm LNM 5    
Other Cancer of Unknown Primary CUP 1